I think I have figured it out. I noticed a few dead marigolds, and pulled them up. The roots were brown. I am pretty sure I have plants dealing with root rot. I have some tomatoes and peppers that look like they are dealing with a. deficiency of some sort. Which, according to my research, is how root rot manifests itself above ground.
We have had a lot of rain, and our soil is primarily clay. Thus, it has not drained as well as it should have. Not to mention, the soil has been neglected for about four years without any soil organic matter applied since I was running the garden the first time.
Oh well. I hope I can keep most of my plants, and have a little to can. We are going into a dry stretch...
This fall, I have so much work to do with building this garden up.